Hi Matt,
Thanks for the report. I'm attempting to duplicate the problem here. When you say switch to the "no magnitudes" setting, do you mean if you are running multi-aperture first, and then running "Stack Aligner" with the "Use previous N apertures" option? There
is not a magnitude option in the "Stack Aligner" panel. If that is the case, it seems to work fine for me so far on this end.
Also, I want to make sure we are looking at the same AIJ feature. You mentioned "image aligner" which I have interpreted as the "Stack Aligner" option that is accessed at Process->"Align stack using WCS or apertures" in the menus attached to the image display,
or by clicking the icon above an image display. That brings up a "Stack Aligner" panel that I have set up as follows (and I previously had run Multi-Aperture and entered magnitudes). Can you see any
significant differences in what we are doing that might help me reproduce the problem you are experiencing?
Karen
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