Re: AstroImageJ_Updater not working on Mac with OS 10.12
URL: http://astroimagej.170.s1.nabble.com/AstroImageJ-Updater-not-working-on-Mac-with-OS-10-12-tp513p517.html
IJ.write("" + slice + "\t" + calculate(ip));
^
ij/plugin/filter/PlugInFilter.java(ij/plugin/filter:PlugInFilter.java):10: error while writing ij.plugin.filter.PlugInFilter: PlugInFilter.class (Read-only file system)
public interface PlugInFilter {
^
ij/ImagePlus.java(ij:ImagePlus.java):2126: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
listeners.addElement(listener);
^
ij/gui/ImageWindow.java(ij/gui:ImageWindow.java):107: warning: [deprecation] show() in java.awt.Window has been deprecated
if (!Prefs.get("Astronomy_Tool.autoConvert", false) || (this instanceof PlotWindow) || (this instanceof HistogramWindow) || this.getTitle().startsWith("Profile of") || this.getTitle().startsWith("About")) show();
^
ij/gui/ImageWindow.java(ij/gui:ImageWindow.java):139: warning: [deprecation] show() in java.awt.Window has been deprecated
if (!Prefs.get("Astronomy_Tool.autoConvert", false) || (this instanceof PlotWindow) || (this instanceof HistogramWindow) || this.getTitle().startsWith("Profile of") || this.getTitle().startsWith("About")) show();
^
ij/gui/Roi.java(ij/gui:Roi.java):876: warning: [deprecation] getDisplayList() in ij.gui.ImageCanvas has been deprecated
if (Interpreter.isBatchMode() && ic!=null && ic.getDisplayList()!=null && strokeColor==null && fillColor==null)
^
ij/ImageJ.java(ij:ImageJ.java):185: warning: [deprecation] show() in java.awt.Window has been deprecated
show();
^
ij/ImageJ.java(ij:ImageJ.java):596: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
classes.addElement(c);
^
ij/gui/ImageCanvas.java(ij/gui:ImageCanvas.java):1356: warning: [unchecked] unchecked call to add(E) as a member of the raw type java.util.Vector
displayList.add(overlay.get(i));
^
ij/gui/Overlay.java(ij/gui:Overlay.java):24: warning: [unchecked] unchecked call to add(E) as a member of the raw type java.util.Vector
list.add(roi);
^
ij/gui/Overlay.java(ij/gui:Overlay.java):29: warning: [unchecked] unchecked call to add(E) as a member of the raw type java.util.Vector
list.add(roi);
^
ij/gui/Overlay.java(ij/gui:Overlay.java):49: warning: [unchecked] unchecked call to add(E) as a member of the raw type java.util.Vector
list.add(roi);
^
ij/gui/Overlay.java(ij/gui:Overlay.java):96: warning: [unchecked] unchecked call to <T>toArray(T[]) as a member of the raw type java.util.Vector
return (Roi[])list.toArray(array);
^
ij/plugin/MacroInstaller.java(ij/plugin:MacroInstaller.java):110: warning: [unchecked] unchecked call to add(E) as a member of the raw type java.util.ArrayList
tools.add(name);
^
ij/plugin/MacroInstaller.java(ij/plugin:MacroInstaller.java):293: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
macroShortcuts.put(new Integer(code), commandPrefix+name);
^
ij/plugin/MacroInstaller.java(ij/plugin:MacroInstaller.java):305: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
shortcuts.put(new Integer(code), commandPrefix+name);
^
ij/plugin/frame/Editor.java(ij/plugin/frame:Editor.java):233: warning: [deprecation] show() in java.awt.Window has been deprecated
show();
^
ij/plugin/frame/Editor.java(ij/plugin/frame:Editor.java):303: warning: [deprecation] show() in java.awt.Window has been deprecated
show();
^
ij/macro/Interpreter.java(ij/macro:Interpreter.java):1725: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
imageTable.addElement(imp);
^
ij/text/TextWindow.java(ij/text:TextWindow.java):98: warning: [deprecation] show() in java.awt.Window has been deprecated
show();
^
ij/text/TextWindow.java(ij/text:TextWindow.java):117: warning: [deprecation] show() in java.awt.Window has been deprecated
show();
^
ij/macro/Functions.java(ij/macro:Functions.java):1374: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
vector.addElement(v);
^
ij/macro/Functions.java(ij/macro:Functions.java):2684: warning: [deprecation] show() in java.awt.Window has been deprecated
if (!win.isVisible()) win.show();
^
ij/macro/Functions.java(ij/macro:Functions.java):3356: warning: [deprecation] calculate(java.lang.String,ij.ImagePlus,ij.ImagePlus) in ij.plugin.ImageCalculator has been deprecated
ic.calculate(operator, img1, img2);
^
ij/macro/Functions.java(ij/macro:Functions.java):3646: warning: [unchecked] unchecked call to add(E) as a member of the raw type java.util.Vector
vargs.add(getNextString());
^
ij/macro/Functions.java(ij/macro:Functions.java):3671: warning: [unchecked] unchecked call to getMethod(java.lang.String,java.lang.Class<?>...) as a member of the raw type java.lang.Class
m = c.getMethod(methodName,argClasses);
^
ij/macro/Functions.java(ij/macro:Functions.java):3686: warning: [unchecked] unchecked call to getMethod(java.lang.String,java.lang.Class<?>...) as a member of the raw type java.lang.Class
m = c.getMethod(methodName,argClasses);
^
ij/macro/Functions.java(ij/macro:Functions.java):3809: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
pgm.menus.put(name, commands);
^
ij/macro/Functions.java(ij/macro:Functions.java):3875: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
v.addElement((String)en.nextElement());
^
ij/macro/Functions.java(ij/macro:Functions.java):4013: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
interp.pgm.extensionRegistry.put(descriptors[i].name, descriptors[i]);
^
ij/macro/Functions.java(ij/macro:Functions.java):4045: warning: [unchecked] unchecked call to add(E) as a member of the raw type java.util.Vector
v.add(arg1);
^
ij/macro/Functions.java(ij/macro:Functions.java):4047: warning: [unchecked] unchecked call to add(E) as a member of the raw type java.util.Vector
v.add(getNextString());
^
ij/macro/Functions.java(ij/macro:Functions.java):4502: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
v.addElement(en.nextElement());
^
ij/macro/Functions.java(ij/macro:Functions.java):4770: warning: [unchecked] unchecked call to add(E) as a member of the raw type java.util.ArrayList
list.add((Variable)a[i].clone());
^
ij/macro/Functions.java(ij/macro:Functions.java):4776: warning: [unchecked] unchecked call to add(E) as a member of the raw type java.util.ArrayList
list.add(v);
^
ij/macro/Functions.java(ij/macro:Functions.java):4781: warning: [unchecked] unchecked call to add(E) as a member of the raw type java.util.ArrayList
list.add(v);
^
ij/macro/Functions.java(ij/macro:Functions.java):5209: warning: [deprecation] setLineWidth(int) in ij.gui.Roi has been deprecated
roi.setLineWidth(getProcessor().getLineWidth());
^
ij/plugin/frame/RoiManager.java(ij/plugin/frame:RoiManager.java):133: warning: [deprecation] show() in java.awt.Window has been deprecated
show();
^
ij/plugin/frame/RoiManager.java(ij/plugin/frame:RoiManager.java):331: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
rois.put(label, roiCopy);
^
ij/plugin/frame/RoiManager.java(ij/plugin/frame:RoiManager.java):366: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
rois.put(label, (Roi)roi.clone());
^
ij/plugin/frame/RoiManager.java(ij/plugin/frame:RoiManager.java):504: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
rois.put(name, roi2);
^
ij/plugin/frame/RoiManager.java(ij/plugin/frame:RoiManager.java):506: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
rois.put(name, roi);
^
ij/plugin/frame/RoiManager.java(ij/plugin/frame:RoiManager.java):523: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
rois.put(name2, roi);
^
ij/plugin/frame/RoiManager.java(ij/plugin/frame:RoiManager.java):660: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
rois.put(name, roi);
^
ij/plugin/frame/RoiManager.java(ij/plugin/frame:RoiManager.java):689: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
rois.put(name, roi);
^
ij/plugin/frame/RoiManager.java(ij/plugin/frame:RoiManager.java):740: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
rois.put(newName, roi);
^
ij/plugin/frame/RoiManager.java(ij/plugin/frame:RoiManager.java):925: warning: [deprecation] getValue(int,int) in ij.measure.ResultsTable has been deprecated
rtMulti.addValue(head+suffix, rtSys.getValue(j,rtSys.getCounter()-1));
^
ij/plugin/frame/RoiManager.java(ij/plugin/frame:RoiManager.java):1378: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
rois.put(name2, roi);
^
ij/text/TextPanel.java(ij/text:TextPanel.java):177: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
vData.addElement(chars);
^
ij/text/TextPanel.java(ij/text:TextPanel.java):227: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
vData.addElement(chars);
^
ij/text/TextPanel.java(ij/text:TextPanel.java):837: warning: [unchecked] unchecked call to setElementAt(E,int) as a member of the raw type java.util.Vector
vData.setElementAt(s.toCharArray(), index);
^
ij/gui/Plot.java(ij/gui:Plot.java):730: warning: [unchecked] unchecked call to add(E) as a member of the raw type java.util.ArrayList
storedData.add(xvalues);
^
ij/gui/Plot.java(ij/gui:Plot.java):731: warning: [unchecked] unchecked call to add(E) as a member of the raw type java.util.ArrayList
storedData.add(yvalues);
^
ij/gui/GenericDialog.java(ij/gui:GenericDialog.java):172: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
numberField.addElement(tf);
^
ij/gui/GenericDialog.java(ij/gui:GenericDialog.java):173: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
defaultValues.addElement(new Double(defaultValue));
^
ij/gui/GenericDialog.java(ij/gui:GenericDialog.java):174: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
defaultText.addElement(tf.getText());
^
ij/gui/GenericDialog.java(ij/gui:GenericDialog.java):208: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
labels.put(component, label);
^
ij/gui/GenericDialog.java(ij/gui:GenericDialog.java):260: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
stringField.addElement(tf);
^
ij/gui/GenericDialog.java(ij/gui:GenericDialog.java):301: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
checkbox.addElement(cb);
^
ij/gui/GenericDialog.java(ij/gui:GenericDialog.java):407: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
checkbox.addElement(cb);
^
ij/gui/GenericDialog.java(ij/gui:GenericDialog.java):461: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
choice.addElement(thisChoice);
^
ij/gui/GenericDialog.java(ij/gui:GenericDialog.java):559: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
slider.addElement(s);
^
ij/gui/GenericDialog.java(ij/gui:GenericDialog.java):576: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
numberField.addElement(tf);
^
ij/gui/GenericDialog.java(ij/gui:GenericDialog.java):579: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
defaultValues.addElement(new Double(defaultValue/scale));
^
ij/gui/GenericDialog.java(ij/gui:GenericDialog.java):580: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
defaultText.addElement(tf.getText());
^
ij/gui/GenericDialog.java(ij/gui:GenericDialog.java):725: warning: [unchecked] unchecked call to addElement(E) as a member of the raw type java.util.Vector
dialogListeners.addElement(dl);
^
ij/gui/WaitForUserDialog.java(ij/gui:WaitForUserDialog.java):50: warning: [unchecked] unchecked call to getDeclaredMethod(java.lang.String,java.lang.Class<?>...) as a member of the raw type java.lang.Class
Method setAlwaysOnTop = windowClass.getDeclaredMethod("setAlwaysOnTop", new Class[] {Boolean.TYPE});
^
ij/gui/WaitForUserDialog.java(ij/gui:WaitForUserDialog.java):60: warning: [deprecation] show() in java.awt.Dialog has been deprecated
public void show() {
^
ij/gui/WaitForUserDialog.java(ij/gui:WaitForUserDialog.java):61: warning: [deprecation] show() in java.awt.Dialog has been deprecated
super.show();
^
ij/gui/PlotWindow.java(ij/gui:PlotWindow.java):286: warning: [unchecked] unchecked call to ArrayList(java.util.Collection<? extends E>) as a member of the raw type java.util.ArrayList
ArrayList displayed = new ArrayList(plot.storedData);
^
ij/gui/PlotWindow.java(ij/gui:PlotWindow.java):291: warning: [unchecked] unchecked call to add(int,E) as a member of the raw type java.util.ArrayList
displayed.add(2, plot.errorBars);
^
ij/plugin/filter/PlugInFilterRunner.java(ij/plugin/filter:PlugInFilterRunner.java):424: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
sliceForThread.put(Thread.currentThread(), number);
^
ij/plugin/filter/Analyzer.java(ij/plugin/filter:Analyzer.java):689: warning: [deprecation] write(java.lang.String) in ij.IJ has been deprecated
IJ.write(rt.getRowAsString(counter-1));
^
ij/plugin/frame/ContrastAdjuster.java(ij/plugin/frame:ContrastAdjuster.java):228: warning: [deprecation] show() in java.awt.Dialog has been deprecated
show();
^
ij/plugin/filter/GaussianBlur.java(ij/plugin/filter:GaussianBlur.java):58: warning: [deprecation] getBoundingRect() in ij.gui.Roi has been deprecated
Rectangle roiRect = imp.getRoi().getBoundingRect();
^
ij/IJ.java(ij:IJ.java):263: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("New...", "Image...");
^
ij/IJ.java(ij:IJ.java):264: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Threshold", "Make Binary");
^
ij/IJ.java(ij:IJ.java):265: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Display...", "Appearance...");
^
ij/IJ.java(ij:IJ.java):266: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Start Animation", "Start Animation [\\]");
^
ij/IJ.java(ij:IJ.java):267: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Convert Images to Stack", "Images to Stack");
^
ij/IJ.java(ij:IJ.java):268: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Convert Stack to Images", "Stack to Images");
^
ij/IJ.java(ij:IJ.java):269: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Convert Stack to RGB", "Stack to RGB");
^
ij/IJ.java(ij:IJ.java):270: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Convert to Composite", "Make Composite");
^
ij/IJ.java(ij:IJ.java):271: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("New HyperStack...", "New Hyperstack...");
^
ij/IJ.java(ij:IJ.java):272: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Stack to HyperStack...", "Stack to Hyperstack...");
^
ij/IJ.java(ij:IJ.java):273: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("HyperStack to Stack", "Hyperstack to Stack");
^
ij/IJ.java(ij:IJ.java):274: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("RGB Split", "Split Channels");
^
ij/IJ.java(ij:IJ.java):275: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("RGB Merge...", "Merge Channels...");
^
ij/IJ.java(ij:IJ.java):276: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Channels...", "Channels Tool...");
^
ij/IJ.java(ij:IJ.java):277: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("New... ", "Table...");
^
ij/IJ.java(ij:IJ.java):278: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Arbitrarily...", "Rotate... ");
^
ij/IJ.java(ij:IJ.java):279: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Measurements...", "Results... ");
^
ij/IJ.java(ij:IJ.java):280: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("List Commands...", "Find Commands...");
^
ij/IJ.java(ij:IJ.java):281: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Capture Screen ", "Capture Screen");
^
ij/IJ.java(ij:IJ.java):282: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Add to Manager ", "Add to Manager");
^
ij/IJ.java(ij:IJ.java):283: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("In", "In [+]");
^
ij/IJ.java(ij:IJ.java):284: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Out", "Out [-]");
^
ij/IJ.java(ij:IJ.java):285: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Enhance Contrast", "Enhance Contrast...");
^
ij/IJ.java(ij:IJ.java):286: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("XY Coodinates... ", "XY Coordinates... ");
^
ij/IJ.java(ij:IJ.java):287: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Statistics...", "Statistics");
^
ij/IJ.java(ij:IJ.java):288: warning: [unchecked] unchecked call to put(K,V) as a member of the raw type java.util.Hashtable
commandTable.put("Channels Tool... ", "Channels Tool...");
^
Note: Some input files additionally use or override a deprecated API.
Note: Some input files additionally use unchecked or unsafe operations.
1 error
100 warnings
Hi Walter,
I am running OS X 10.11.6 with Java 7 Update 71, and can't duplicate the problem. I have started the upgrade to the new OS X version, but that looks like it will take a while. I doubt that is the problem, but I need to make sure, and should know tomorrow night. I have students that use Java 8, so I don't think that is the problem either.
In the mean time, this sounds like an installation problem (although there is not much that can go wrong). While I am updating, would you please remove the current AIJ installation and re-download AIJ, unzip it, and move the AstroImageJ folder to the Applications folder. Then double-click AstroImageJ64.app to open AIJ, then click the bottom half of the AIJ toolbar and either send a screen shot of the information reported in the lower half of the toolbar, or type it out exactly. It will look something like this:
Note that the java version may be 1.6.0_65 or similar, even with Java 8 installed. If it will work, also go to Toolbar->Help->About AstroImageJ and send me a screen shot of the window that opens. It will look something like this:
I'll let you know what I find about the new OS X version tomorrow night U.S. time.
Karen
If you reply to this email, your message will be added to the discussion below:http://astroimagej.1065399.n5.nabble.com/AstroImageJ- Updater-not-working-on-Mac- with-OS-10-12-tp513p516.html
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