Just starting to get acquainted with AstroimageJ. Import a sequence of FITS images of a star field, astronomy tool button clicked, click multi-aperture, all the options in that menu set to suitable values. Moving mouse over image I see the several concentric circles in blue centered on a crosshair, representing central aperture and sky annulus. Left click on a star image, expecting to see a red circle as the manual says, but nothing appears. And no drawn circle appears after any subsequent clicks elsewhere (manual predicts green circles). Have tried Image - Overlay - Show Overlay, changing line thickness and colors in Edit - Options, no luck. Measurements do appear in a "Log" window if I click the mouse center wheel, but no aperture of any color appears whether either mouse button clicked, or wheel clicked. Only wheel click produces line of measurement data text.
Our FITS images are not visible unless I select Image - Type - 32-bit, then the stack gets re-scaled. Tried the 16-bit sample image of M51, same result i.e. measurement data text but no drawn apertures where mouse clicked. |
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Another user reported a similar problem, and it turned out that the
"DATE-OBS" format in the FITS header was different from what is
expected by AIJ. The expected format is "2013-01-27T00:39:54". If
the format is something like "22/03/99", aperture photometry will
hang and nothing happens when you attempt to do photometry. I have
this as a high priority bug fix request, but it may be another week
before I can provide a fix.
So that I can verify that this is your problem, can you post a copy of your FITS header? If your DATE-OBS format doesn't match the above, for now you can completely remove the DATE-OBS entry from the headers of your FITS file and photometry should then work. You can do that by opening the image, then open the FITS header editor , and then highlight the DATE-OBS line with the mouse, click the "DELETE" button, and then the "SAVE FILE" button as shown in the screen grab below. NOTE: be sure to do a SAVE FILE rather than a SAVE which just saves the new header to AIJ memory, but not to disk. |
After some browsing here saw another thread that sounded similar, and you had suggested version update. Did so, now have 2.1.3, but that didn't fix problem.
Here's an original FITS header, with the suspect DATE-OBS as you expected. Below that after making a copy of the entire FITS image file, and editing that line out using AIJ. Then closed the copied edited file & re-opened Original header: SIMPLE = T / standard conforming (constant T) BITPIX = 16 / bits per pixel (constant 16 for current imagers NAXIS = 2 / number of axes NAXIS1 = 1024 / image width NAXIS2 = 1024 / image height ORIGIN = 'SOFIA ' / Stratospheric Observatory for Infrared Astronom DATE = '2013-07-24T13:35:32.985Z' / When image was created by TA HISTORY Extracted from ARK file: fpi_node_b.ta_fpi.130724133436.ark FILENAME= 'FPI.20130724T133532.985Z.fits' / file name (Imager.Time.fits) OBSERVAT= 'SOFIA ' / Stratospheric Observatory for Infrared Astronom TELESCOP= 'SOFIA ' / 2.5 meter telescope IMAGTYP = 'CCD_IMAGE' / image type ('CCD_IMAGE', 'DRKFLD' or 'FLTFLD') INSTRUME= 'FPI ' / 'FPI', 'FFI' or 'WFI' DATE-OBS= '2013-07-24' / date of exposure start UTCSTART= '13:35:29.510Z' / UTC of exposure start UTCEND = '13:35:32.010Z' / UTC of exposure finish EXPTIME = 2.5 / seconds BINNING = '1x1 ' / pixel grouping (='1x1', '2x2' or '4x4') PIXBITS = 14 / ADC bits (=8, 14 or 16) DATAMAX = 16383 / detector full well maximum (=2^PIXBITS - 1) DATAMIN = 0 / smallest value from detector IMAGE_SN= 33170 / image id (WFI: 1XXXX, FFI: 2XXXX,FPI: 3XXXX) IMAGUSE = 'NORMAL ' / Image usage FILTPOS = 'FILTER_ND3' / filter position FOCLEN = '5257.0347' / focal len of camera optics (mm) (100 to 100000) KWDICT = 'DCS SI 01 A' / conforms with DCS keyword dictionary version FPIFOCUS= '39.3818 ' / focus pos (mm) (-300 to 300) -1000 unknown) FPIRETCL= '-1.0000 ' / reticle brtnes (0.0 to 1.0, or -1 if undef) _________________________________________________________________ After removing DATE-OBS line from copy of file, saving, closing & re-opening: SIMPLE = T / Created by ImageJ FITS_Writer BITPIX = 16 / number of bits per data pixel NAXIS = 2 / number of data axes NAXIS1 = 1024 / length of data axis 1 NAXIS2 = 1024 / length of data axis 2 ORIGIN = 'SOFIA ' / Stratospheric Observatory for Infrared Astronom DATE = '2013-07-24T13:35:32.985Z' / When image was created by TA HISTORY Extracted from ARK file: fpi_node_b.ta_fpi.130724133436.ark FILENAME= 'FPI.20130724T133532.985Z.fits' / file name (Imager.Time.fits) OBSERVAT= 'SOFIA ' / Stratospheric Observatory for Infrared Astronom TELESCOP= 'SOFIA ' / 2.5 meter telescope IMAGTYP = 'CCD_IMAGE' / image type ('CCD_IMAGE', 'DRKFLD' or 'FLTFLD') INSTRUME= 'FPI ' / 'FPI', 'FFI' or 'WFI' UTCSTART= '13:35:29.510Z' / UTC of exposure start UTCEND = '13:35:32.010Z' / UTC of exposure finish EXPTIME = 2.5 / seconds BINNING = '1x1 ' / pixel grouping (='1x1', '2x2' or '4x4') PIXBITS = 14 / ADC bits (=8, 14 or 16) DATAMAX = 16383 / detector full well maximum (=2^PIXBITS - 1) DATAMIN = 0 / smallest value from detector IMAGE_SN= 33170 / image id (WFI: 1XXXX, FFI: 2XXXX,FPI: 3XXXX) IMAGUSE = 'NORMAL ' / Image usage FILTPOS = 'FILTER_ND3' / filter position FOCLEN = '5257.0347' / focal len of camera optics (mm) (100 to 100000) KWDICT = 'DCS SI 01 A' / conforms with DCS keyword dictionary version FPIFOCUS= '39.3818 ' / focus pos (mm) (-300 to 300) -1000 unknown) FPIRETCL= '-1.0000 ' / reticle brtnes (0.0 to 1.0, or -1 if undef) END stll nothing appears after right mouse clicks on image. Trying either aperture photometry tool or multiple aperture tool enabled. |
Administrator
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This DATE-OBS format and the UTCSTART and TAITIME keywords are now supported by AIJ. Furthermore, unsupported time KEYWORDS and formats will not cause Aperture to hang. These fixes are in the daily build now posted to the update site and will be in any releases 2.1.4 and later.
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