I can see the problem with your measurements table and plotcfg files. Something has apparently gotten corrupted in the plotcfg file. I can't track down the problem at this time, but we will try to determine what is going wrong to avoid the problem for others.
In the meantime, you'll need to reset your AIJ preferences to the defaults. I have verified that your measurements table will then plot correctly. To do so, go to Multi-plot_Main > File > "Restore all default AIJ preferences. Then restart AIJ and set up your plot as desired.
I will not a couple of things about your measurements table. All of your airmass values are "-1". This probably means you didn't have ra and dec and lat and long set correctly when airmass was calculated.
You are also using the above incorrect airmass to detrend, which causes a problem. I don't know yet if this is how the measurements file got corrupted, but it could be related.
You will notice that there is one very low point at the end of your observation. This could be causing plot problems for you when you get things set back up. You'll probably want to remove that bad data point.